Scientific Apps

• GROMACS - OpenSource MD software
• CHARMM - Chemistry at HARvard Molecular Mechanics
• DELPHI - A Finite Difference Poisson-Boltzman Solver
• MSMS (part of Packager) - Excellent surface generation program written by Michel Sanner
• RCSB Homepage, the Protein Databank
• BrownDye - University of Houston Brownian Dynamics Program
• CNS - Crystallography and NMR system
• SPIDER - EM Image Processing Package
• Xmipp - EM Image Processing Package

Miscellaneous

• POV-ray a powerful raytracer package
• ProteinPictureGenerator - A nice site to automatically generate a picture of a coordinate file. Uses DINO as backend. Upon generation of a picture, the script file employed may be downloaded as well, which might serve as an excellent start to get going with DINO.
• MESA 3D - a free OpenGL like API
• LessTif - a free Motif clone